Subset a Motif object

Returns a subset of a Motif-class() object.

Usage

# S3 method for class 'Motif'
subset(x, features = NULL, motifs = NULL, ...)

# S3 method for class 'Motif'
x[i, j, ...]

Arguments

x

A Motif object

features

Which features to retain

motifs

Which motifs to retain

...

Arguments passed to other methods

i

Which columns to retain

j

Which rows to retain

Value

Returns a subsetted Motif object

See also

base::subset()

Examples

motif.obj <- SeuratObject::GetAssayData(
  object = atac_small[["peaks"]], layer = "motifs"
)
subset(x = motif.obj, features = head(rownames(motif.obj), 10))
#> A Motif object containing 10 motifs in 10 regions
motif.obj <- SeuratObject::GetAssayData(
  object = atac_small, assay = "peaks", layer = "motifs"
)
motif.obj[1:10, 1:10]
#> A Motif object containing 10 motifs in 10 regions