Current release
setRepositories(ind = 1:3) # to automatically install Bioconductor dependencies
install.packages("Signac")Development version
Unreleased versions of Signac can be installed from the GitHub repository using the devtools package:
v1 develop branch
if (!requireNamespace("remotes", quietly = TRUE)) {
install.packages("remotes")
}
remotes::install_github("stuart-lab/signac", ref = "develop")v2 beta release
remotes::install_github("stuart-lab/signac", ref = "v2")Old versions
Older Signac releases can be installed from the CRAN archive using devtools:
if (!requireNamespace("remotes", quietly = TRUE)) {
install.packages("remotes")
}
# replace "0.2.5" with the version that you want to install
remotes::install_version(package = "Signac", version = package_version("0.2.5"))Docker
We provide docker images for Signac via dockerhub.
To pull the latest image from the command line:
To use as a base image in a new Dockerfile:
Conda
Signac can also be installed using conda. Note that if you use conda, you should install all packages through conda rather than R itself.
Installing genome assembly and gene annotation packages
It can also be useful (but not essential) to install species-specific packages containing genome and gene annotation information from Bioconductor.
This table from Ensembl provides a mapping of genome assembly to the corresponding gene annotation version.