Subset a Fragment object

Returns a subset of a Fragment() object.

Usage

# S3 method for class 'Fragment2'
subset(x, cells = NULL, ...)

Arguments

x

A Fragment object

cells

Vector of cells to retain

...

Arguments passed to other methods

Value

Returns a subsetted Fragment() object

See also

base::subset()

Examples

fpath <- system.file("extdata", "fragments.tsv.gz", package = "Signac")
cells <- colnames(x = atac_small)
names(x = cells) <- paste0("test_", cells)
frags <- CreateFragmentObject(
  path = fpath, cells = cells, verbose = FALSE, tolerance = 0.5
)
subset(frags, head(names(cells)))
#> A Fragment v2 object for 6 cells
#>  Unknown seqlevels