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Access sequence information for GRangesAssay objects

Source: R/seqinfo-methods.R
seqinfo-methods.Rd

Methods for accessing the Seqinfo::Seqinfo() object information stored in a GRangesAssay object. To change the sequence information, set the ranges with granges<-.

Usage

# S4 method for class 'GRangesAssay'
seqinfo(x)

# S4 method for class 'GRangesAssay'
seqlevels(x)

# S4 method for class 'GRangesAssay'
seqnames(x)

# S4 method for class 'GRangesAssay'
seqlengths(x)

# S4 method for class 'GRangesAssay'
genome(x)

# S4 method for class 'GRangesAssay'
isCircular(x)

# S4 method for class 'Seurat'
seqinfo(x)

# S4 method for class 'Seurat'
seqlevels(x)

# S4 method for class 'Seurat'
seqnames(x)

# S4 method for class 'Seurat'
seqlengths(x)

# S4 method for class 'Seurat'
genome(x)

# S4 method for class 'Seurat'
isCircular(x)

Arguments

x

A GRangesAssay object

Functions

  • seqlevels(GRangesAssay): get method for GRangesAssay objects

  • seqnames(GRangesAssay): get method for GRangesAssay objects

  • seqlengths(GRangesAssay): get method for GRangesAssay objects

  • genome(GRangesAssay): get method for GRangesAssay objects

  • isCircular(GRangesAssay): get method for GRangesAssay objects

  • seqinfo(Seurat): get method for Seurat objects

  • seqlevels(Seurat): get method for Seurat objects

  • seqnames(Seurat): get method for Seurat objects

  • seqlengths(Seurat): get method for Seurat objects

  • genome(Seurat): get method for Seurat objects

  • isCircular(Seurat): get method for Seurat objects

See also