Get or set a motif information — Motifs • Signac

Get or set the Motif object for a Seurat object or ChromatinAssay5.

Usage

Motifs(object, ...)

Motifs(object, ...) <- value

# S3 method for class 'ChromatinAssay5'
Motifs(object, ...)

# S3 method for class 'Seurat'
Motifs(object, assay = NULL, ...)

# S3 method for class 'ChromatinAssay5'
Motifs(object, ...) <- value

# S3 method for class 'Seurat'
Motifs(object, assay = NULL, ...) <- value

Arguments

object: A Seurat or ChromatinAssay5 object
...: Arguments passed to other methods
value: A Motif object
assay: Name of assay to use

Examples

Motifs(atac_small[["peaks"]])
#> A Motif object containing 10 motifs in 100 regions
Motifs(atac_small)
#> A Motif object containing 10 motifs in 100 regions
motifs <- Motifs(atac_small)
Motifs(atac_small[["peaks"]]) <- motifs
#> Warning: Overwriting motif information
motifs <- Motifs(atac_small)
Motifs(atac_small) <- motifs
#> Warning: Overwriting motif information