Display links between pairs of genomic elements within a given region of the genome.
Usage
LinkPlot(
object,
region,
key,
assay = NULL,
min.cutoff = 0,
extend.upstream = 0,
extend.downstream = 0,
scale.linewidth = FALSE
)Arguments
- object
A
SeuratObject::Seurat()object- region
A genomic region to plot
- key
Key to use when extracting link information from the Seurat object
- assay
Name of assay to use. If NULL, use the default assay.
- min.cutoff
Minimum absolute score for link to be plotted.
- extend.upstream
Number of bases to extend the region upstream.
- extend.downstream
Number of bases to extend the region downstream.
- scale.linewidth
Scale thickness of the line according to link score.
Value
Returns a ggplot2::ggplot() object