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Inter-range transformations for GRangesAssay objects

Source: R/iranges-methods.R
inter-range-methods.Rd

The range, reduce, gaps, disjoin, isDisjoint, disjointBins methods are available for GRangesAssay objects.

Usage

# S4 method for class 'GRangesAssay'
range(x, ..., with.revmap = FALSE, na.rm = FALSE)

# S4 method for class 'Seurat'
range(x, ..., with.revmap = FALSE, na.rm = FALSE)

# S4 method for class 'GRangesAssay'
reduce(x, drop.empty.ranges = FALSE, ...)

# S4 method for class 'Seurat'
reduce(x, drop.empty.ranges = FALSE, ...)

# S4 method for class 'GRangesAssay'
gaps(x, start = NA, end = NA)

# S4 method for class 'Seurat'
gaps(x, start = NA, end = NA)

# S4 method for class 'GRangesAssay'
disjoin(x, ...)

# S4 method for class 'Seurat'
disjoin(x, ...)

# S4 method for class 'GRangesAssay'
isDisjoint(x, ...)

# S4 method for class 'Seurat'
isDisjoint(x, ...)

# S4 method for class 'GRangesAssay'
disjointBins(x, ...)

# S4 method for class 'Seurat'
disjointBins(x, ...)

Arguments

x

A GRangesAssay object

...

Additional arguments

with.revmap

See IRanges::inter-range-methods() in the IRanges packages

na.rm

Ignored

drop.empty.ranges

See ?[inter-range-methods][IRanges::inter-range-methods]

start, end

See ?[inter-range-methods][IRanges::inter-range-methods]

Functions

See also