Retrieve genomic link information for a given set of regions.
Usage
GetLinkedGenes(object, ...)
# S3 method for class 'Seurat'
GetLinkedGenes(object, features, key, assay = NULL, min.abs.score = 0, ...)
# S3 method for class 'Assay5'
GetLinkedGenes(object, ...)
# S3 method for class 'ChromatinAssay5'
GetLinkedGenes(object, features, key, min.abs.score = 0, ...)Arguments
- object
A SeuratObject::Seurat object
- ...
Arguments passed to other methods
- features
A list of peaks to find linked genes for
- key
Key for link information to extract from the assay
- assay
Name of assay to use. If NULL, use the default assay
- min.abs.score
Minimum absolute value of the link score for a link to be returned