Plot sequencing depth correlation — DepthCor • Signac

Compute the correlation between total counts and each reduced dimension component.

Usage

DepthCor(object, assay = NULL, reduction = "lsi", n = 10, ...)

Arguments

object: A SeuratObject::Seurat() object
assay: Name of assay to use for sequencing depth. If NULL, use the default assay.
reduction: Name of a dimension reduction stored in the input object
n: Number of components to use. If NULL, use all components.
...: Additional arguments passed to stats::cor()

Value

Returns a ggplot2::ggplot() object

Examples

# \donttest{
DepthCor(object = atac_small)

# }