Create a scatterplot using variables in the object metadata and color cells by the density of points in the x-y space.
Usage
DensityScatter(
object,
x,
y,
log_x = FALSE,
log_y = FALSE,
quantiles = NULL,
raster = NULL,
raster.dpi = c(512, 512)
)Arguments
- object
A Seurat object
- x
Name of metadata variable to plot on x axis
- y
Name of metadata variable to plot on y axis
- log_x
log10 transform x values
- log_y
log10 transform y values
- quantiles
Vector of quantiles to display for x and y data distribution. Must be integer values between 0 and 100. TRUE can be passed as a shorthand way to set
c(5, 10, 90, 95). If FALSE or NULL, no quantile information is displayed- raster
Convert points to raster format. If NULL, points will automatically be rasterized if plotting more than 100,000 cells.
- raster.dpi
Pixel resolution for rasterized plots.