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Coverage of a GRangesAssay object

Source: R/iranges-methods.R
coverage-GRangesAssay-method.Rd

This is the coverage method for GRangesAssay objects.

Usage

# S4 method for class 'GRangesAssay'
coverage(
  x,
  shift = 0L,
  width = NULL,
  weight = 1L,
  method = c("auto", "sort", "hash")
)

# S4 method for class 'Seurat'
coverage(
  x,
  shift = 0L,
  width = NULL,
  weight = 1L,
  method = c("auto", "sort", "hash")
)

Arguments

x

A GRangesAssay object

shift

How much each range should be shifted before coverage is computed. See IRanges::coverage() in the IRanges::IRanges package.

width

Specifies the length of the returned coverage vectors. See IRanges::coverage() in the IRanges::IRanges package.

weight

Assigns weight to each range in x. See IRanges::coverage() in the IRanges::IRanges package.

method

See IRanges::coverage() in the IRanges::IRanges package

Functions

  • coverage(GRangesAssay): method for GRangesAssay objects

  • coverage(Seurat): method for Seurat objects

See also