Display gene annotations in a given region of the genome.
Usage
AnnotationPlot(
object,
region,
assay = NULL,
mode = "gene",
extend.upstream = 0,
extend.downstream = 0
)Arguments
- object
A
SeuratObject::Seurat()object- region
A genomic region to plot
- assay
Name of assay to use. If NULL, use the default assay.
- mode
Display mode. Choose either "gene" or "transcript" to determine whether genes or transcripts are plotted.
- extend.upstream
Number of bases to extend the region upstream.
- extend.downstream
Number of bases to extend the region downstream.
Value
Returns a ggplot2::ggplot() object
Examples
# \donttest{
AnnotationPlot(object = atac_small, region = c("chr1:29554-39554"))
# }