Plot motif footprinting results
PlotFootprint( object, features, assay = NULL, group.by = NULL, idents = NULL, label = TRUE, repel = TRUE, show.expected = TRUE, normalization = "subtract", label.top = 3, label.idents = NULL )
| object | A Seurat object |
|---|---|
| features | A vector of features to plot |
| assay | Name of assay to use |
| group.by | A grouping variable |
| idents | Set of identities to include in the plot |
| label | TRUE/FALSE value to control whether groups are labeled. |
| repel | Repel labels from each other |
| show.expected | Plot the expected Tn5 integration frequency below the main footprint plot |
| normalization | Method to normalize for Tn5 DNA sequence bias. Options are "subtract", "divide", or NULL to perform no bias correction. |
| label.top | Number of groups to label based on highest accessibility in motif flanking region. |
| label.idents | Vector of identities to label. If supplied,
|