Extract genomic ranges from EnsDb object

Source: R/utilities.R

Pulls the transcript information for all chromosomes from an EnsDb object. This wraps crunch and applies the extractor function to all chromosomes present in the EnsDb object.

GetGRangesFromEnsDb(
  ensdb,
  standard.chromosomes = TRUE,
  biotypes = c("protein_coding", "lincRNA", "rRNA", "processed_transcript"),
  verbose = TRUE
)

Arguments

ensdb

An EnsDb object
standard.chromosomes

Keep only standard chromosomes
biotypes

Biotypes to keep
verbose

Display messages