Get the Fragment objects

Get the Fragment objects

Fragments(object, ...)

Fragments(object, ...) <- value

# S3 method for ChromatinAssay
Fragments(object, ...)

# S3 method for Seurat
Fragments(object, ...)

# S3 method for ChromatinAssay
Fragments(object, ...) <- value

# S3 method for Seurat
Fragments(object, ...) <- value

Arguments

object	A Seurat object or ChromatinAssay object
...	Arguments passed to other methods
value	A Fragment object or list of Fragment objects

Value

Returns a list of Fragment objects. If there are no Fragment objects present, returns an empty list.

Examples

Fragments(atac_small[["peaks"]])
#> list()
Fragments(atac_small)
#> list()
fpath <- system.file("extdata", "fragments.tsv.gz", package="Signac")
fragments <- CreateFragmentObject(
  path = fpath,
  cells = colnames(atac_small),
  validate.fragments = FALSE
)
#> Computing hash
Fragments(atac_small[["bins"]]) <- fragments
fpath <- system.file("extdata", "fragments.tsv.gz", package="Signac")
fragments <- CreateFragmentObject(
  path = fpath,
  cells = colnames(atac_small),
  validate.fragments = FALSE
)
#> Computing hash
Fragments(atac_small) <- fragments