Convert objects to a ChromatinAssay

as.ChromatinAssay(x, ...)

# S3 method for Assay
as.ChromatinAssay(
  x,
  ranges = NULL,
  seqinfo = NULL,
  annotation = NULL,
  motifs = NULL,
  fragments = NULL,
  bias = NULL,
  positionEnrichment = NULL,
  sep = c("-", "-"),
  ...
)

Arguments

x	An object to convert to class `ChromatinAssay`
...	Arguments passed to other methods
ranges	A GRanges object
seqinfo	A `Seqinfo` object containing basic information about the genome used. Alternatively, the name of a UCSC genome can be provided and the sequence information will be downloaded from UCSC.
annotation	Genomic annotation
motifs	A `Motif` object
fragments	A list of `Fragment` objects
bias	Tn5 integration bias matrix
positionEnrichment	A named list of position enrichment matrices.
sep	Characters used to separate the chromosome, start, and end coordinates in the row names of the data matrix