Extract genomic ranges from EnsDb object

Pulls the transcript information for all chromosomes from an EnsDb object. This wraps crunch and applies the extractor function to all chromosomes present in the EnsDb object.

GetGRangesFromEnsDb(
  ensdb,
  standard.chromosomes = TRUE,
  biotypes = c("protein_coding", "lincRNA", "rRNA", "processed_transcript"),
  verbose = TRUE
)

Arguments

ensdb

An EnsDb object

standard.chromosomes

Keep only standard chromosomes

biotypes

Biotypes to keep

verbose

Display messages