Sequencing depth correlation

Compute the correlation between total counts and each reduced dimension component.

DepthCor(object, assay = NULL, reduction = "lsi", n = 10, ...)

Arguments

object	A Seurat object
assay	Name of assay to use for sequencing depth. If NULL, use the default assay.
reduction	Name of a dimension reduction stored in the input object
n	Number of components to use. If NULL, use all components.
...	Additional arguments passed to cor

Value

Returns a ggplot object

Examples

DepthCor(object = atac_small)
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