Average Counts

Source: R/utilities.R

Compute the mean counts per group of cells for a given assay

AverageCounts(object, assay = NULL, group.by = NULL, verbose = TRUE)

Arguments

object

A Seurat object
assay

Name of assay to use. Default is the active assay
group.by

Grouping variable to use. Default is the active identities
verbose

Display messages

Value

Returns a dataframe

Examples

AverageCounts(atac_small)
#> Summing counts per cell
#> Computing average counts per group
#>        0        1 
#> 11.25455 10.71111