A small example scATAC-seq dataset

Source: R/data.R

A subsetted version of 10x Genomics 10k human (hg19) PBMC scATAC-seq dataset

atac_small

Format

A Seurat object with the following assays

peaks

A peak x cell dataset

bins

A 5 kb genome bin x cell dataset

RNA

A gene x cell dataset

Source

https://support.10xgenomics.com/single-cell-atac/datasets/1.1.0/atac_v1_pbmc_10k