Add a Motif object to a Seurat object

Add a Motif object to a Seurat object

AddMotifObject(object, ...)

# S3 method for Assay
AddMotifObject(object, motif.object, verbose = TRUE, ...)

# S3 method for Seurat
AddMotifObject(object, motif.object, assay = NULL, ...)

Arguments

object	A Seurat object
...	Additional arguments
motif.object	An object of class Motif
verbose	Display messages
assay	Name of assay to store motif object in

Value

Returns a Seurat object

Examples

obj <- GetMotifObject(atac_small[['peaks']])
atac_small[['peaks']] <- AddMotifObject(
object = atac_small[['peaks']], motif.object = obj
)
#> Warning: Overwriting existing motif object in assay
obj <- GetMotifObject(object = atac_small)
atac_small[['peaks']] <- AddMotifObject(
object = atac_small, motif.object = obj
)
#> Warning: Overwriting existing motif object in assay