Subset a Motif object — subset.Motif • Signac

Returns a subset of a Motif-class object.

# S3 method for class 'Motif'
subset(x, features = NULL, motifs = NULL, ...)

# S3 method for class 'Motif'
x[i, j, ...]

Arguments

x: A Motif object
features: Which features to retain
motifs: Which motifs to retain
...: Arguments passed to other methods
i: Which columns to retain
j: Which rows to retain

Value

Returns a subsetted Motif object

See also

Examples

motif.obj <- SeuratObject::GetAssayData(
  object = atac_small[['peaks']], layer = "motifs"
)
subset(x = motif.obj, features = head(rownames(motif.obj), 10))
#> A Motif object containing 10 motifs in 10 regions
motif.obj <- SeuratObject::GetAssayData(
  object = atac_small, assay = 'peaks', layer = 'motifs'
)
motif.obj[1:10,1:10]
#> A Motif object containing 10 motifs in 10 regions