Subset a Fragment object — subset.Fragment • Signac

Returns a subset of a Fragment-class object.

# S3 method for class 'Fragment'
subset(x, cells = NULL, ...)

Arguments

x: A Fragment object
cells: Vector of cells to retain
...: Arguments passed to other methods

Value

Returns a subsetted Fragment object

See also

Examples

fpath <- system.file("extdata", "fragments.tsv.gz", package="Signac")
cells <- colnames(x = atac_small)
names(x = cells) <- paste0("test_", cells)
frags <- CreateFragmentObject(path = fpath, cells = cells, verbose = FALSE, tolerance = 0.5)
subset(frags, head(names(cells)))
#> A Fragment object for 6 cells