Plot motif footprinting results
PlotFootprint( object, features, assay = NULL, group.by = NULL, split.by = NULL, idents = NULL, label = TRUE, repel = TRUE, show.expected = TRUE, normalization = "subtract", label.top = 3, label.idents = NULL )
A Seurat object
A vector of features to plot
Name of assay to use
A grouping variable
A metadata variable to split the plot by. For example, grouping by "celltype" and splitting by "batch" will create separate plots for each celltype and batch.
Set of identities to include in the plot
TRUE/FALSE value to control whether groups are labeled.
Repel labels from each other
Plot the expected Tn5 integration frequency below the main footprint plot
Method to normalize for Tn5 DNA sequence bias. Options are "subtract", "divide", or NULL to perform no bias correction.
Number of groups to label based on highest accessibility in motif flanking region.
Vector of identities to label. If supplied,
label.top will be ignored.