Get peaks linked to genes

Source: R/links.R

Retrieve peak-gene links for a given set of genes. Links must be first obtained by running the LinkPeaks function.

GetLinkedPeaks(object, features, assay = NULL, min.abs.score = 0)

Arguments

object

A Seurat object

features

A list of genes to find linked peaks for

assay

Name of assay to use. If NULL, use the default assay

min.abs.score

Minimum absolute value of the link score for a link to be returned

Details

This function is designed to obtain the stored results from running the LinkPeaks function. Alternatively, custom peak-gene linkage methods can be used as long as they store the gene name, peak name, and a peak-gene score information as metadata columns named "gene," "peak," and "score" respectively.

See also

GetLinkedGenes