Convert between motif name and motif ID — ConvertMotifID • Signac

Converts from motif name to motif ID or vice versa. To convert common names to IDs, use the name parameter. To convert IDs to common names, use the id parameter.

ConvertMotifID(object, ...)

# S3 method for default
ConvertMotifID(object, name, id, ...)

# S3 method for Motif
ConvertMotifID(object, ...)

# S3 method for ChromatinAssay
ConvertMotifID(object, ...)

# S3 method for Assay
ConvertMotifID(object, ...)

# S3 method for StdAssay
ConvertMotifID(object, ...)

# S3 method for Seurat
ConvertMotifID(object, assay = NULL, ...)

Arguments

object: A Seurat, ChromatinAssay, or Motif object
...: Arguments passed to other methods
name: A vector of motif names
id: A vector of motif IDs. Only one of name and id should be supplied
assay: For Seurat object. Name of assay to use. If NULL, use the default assay

Value

Returns a character vector with the same length and order as the input. Any names or IDs that were not found will be stored as NA.