Collapses allele counts for each strand and normalize by the total number of counts at each nucleotide position.
AlleleFreq(object, ...) # S3 method for default AlleleFreq(object, variants, ...) # S3 method for Assay AlleleFreq(object, variants, ...) # S3 method for Seurat AlleleFreq(object, variants, assay = NULL, new.assay.name = "alleles", ...)
A Seurat object, Assay, or matrix
Arguments passed to other methods
A character vector of informative variants to keep. For
Name of assay to use
Name of new assay to store variant data in
Seurat object with a new assay
containing the allele frequencies for the informative variants.