Accessible peaks — AccessiblePeaks • Signac

Find accessible peaks in a set of cells

AccessiblePeaks(
  object,
  assay = NULL,
  idents = NULL,
  cells = NULL,
  min.cells = 10
)

Arguments

object: A Seurat object
assay: Name of assay to use
idents: A set of identity classes to find accessible peaks for
cells: A vector of cells to find accessible peaks for
min.cells: Minimum number of cells with the peak accessible (>0 counts) for the peak to be called accessible

Returns a vector of peak names