Fraction of counts in a genomic region

Find the fraction of counts per cell that overlap a given set of genomic ranges

FractionCountsInRegion(object, regions, assay = NULL, ...)

Arguments

object

A Seurat object

regions

A GRanges object containing a set of genomic regions

assay

Name of assay to use

...

Additional arguments passed to CountsInRegion

Value

Returns a numeric vector

Examples

if (FALSE) {
FractionCountsInRegion(
  object = atac_small,
  assay = 'bins',
  regions = blacklist_hg19
)
}