Set and get cell barcode information for a Fragment object

This returns the names of cells in the object that are contained in the fragment file. These cell barcodes may not match the barcodes present in the fragment file. The Fragment object contains an internal mapping of the cell names in the ChromatinAssay object to the cell names in the fragment file, so that cell names can be changed in the assay without needing to change the cell names on disk.

# S3 method for Fragment
Cells(x, ...)

# S3 method for Fragment
Cells(x, ...) <- value

Arguments

x

A Fragment object

...

Arguments passed to other methods

value

A vector of cell names to store in the Fragment object

Details

To access the cell names that are stored in the fragment file itself, use GetFragmentData(object = x, name = "cells").