Progress in multifactorial single-cell chromatin profiling methods

Tim Stuart

Biochemical Society Transactions. 2024

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Nanobody-tethered transposition enables multifactorial chromatin profiling at single-cell resolution

Tim Stuart, Stephanie Hao, Bingjie Zhang, Levan Mekerishvili, Dan Landau, Silas Maniatis, Rahul Satija, Ivan Raimondi

Nature Biotechnology. 2022

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Single-cell chromatin state analysis with Signac

Tim Stuart, Avi Srivastava, Shaista Madad, Caleb Lareau, Rahul Satija

Nature Methods. 2021

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Comprehensive integration of single-cell data

Tim Stuart*, Andrew Butler*, Paul Hoffman, Christoph Hafemeister, Efthymia Papalexi, William M. Mauck III, Yuhan Hao, Marlon Stoeckius, Peter Smibert, and Rahul Satija.

Cell. 2019

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Integrative single-cell analysis

Tim Stuart and Rahul Satija

Nature Reviews Genetics. 2019

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Population scale mapping of transposable element diversity reveals links to gene regulation and epigenomic variation

Tim Stuart, Steven R Eichten, Jonathan Cahn, Yuliya V Karpievitch, Justin O Borevitz, and Ryan Lister

eLife. 2016

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Unique cell-type-specific patterns of DNA methylation in the root meristem

Taiji Kawakatsu*, Tim Stuart*, Manuel Valdes*, Natalie Breakfield, Robert J. Schmitz, Joseph R. Nery, Mark A. Urich, Xinwei Han, Ryan Lister, Philip N. Benfey, and Joseph R. Ecker

Nature Plants. 2016

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